CLC RNA Workbench 4.0.2 Description:

This 4-week fully functional demo of CLC RNA Workbench - a bioinformatics program for advanced RNA sequence analysis. All analyses are fully integrated in one single, user-friendly, and intuitive software application.

The following is a list of analyses:
· Secondary structure prediction
· Graphical view and editing of secondary structure
· Tabular view of structures and energy contributions
· Symbolic representation in sequence view
· Pattern search
· BLAST searches
· General sequence analyses
· Nucleotide analyses
· Sequence alignment
· Dot plots
· Virtual gel viewer

CLC RNA Workbench 4.0.2 Features:

Bioinformatics features in CLC RNA Workbench:
· Secondary structure prediction
· Graphical view and editing of secondary structure
· Tabular view of structures and energy contributions
· Symbolic representation in sequence view
Pattern search:
· Search for sequence matches
· Motif search for basic patterns
· Motif search using regular expressions
· Motif search with ProSite patterns
· Pattern discovery (unknown patterns)
Project and data management:
· Full integration of data input, data management, calculation results, and data export
· Detailed history log
· All types of files can be saved in local projects, and launched from the program
· Import and export of data in a large number of file formats
· Option of working in several active workspaces at a time, enabling simultaneous work on multiple projects
Other bioinformatics features:
· DNA, RNA and protein sequence editor displaying both linear and circular molecules
· Multiple alignment of DNA, RNA, and proteins
· Joining multiple alignments into one
· DNA, RNA, and protein alignment editor
· Interactive logo graphs along both DNA, RNA and Protein alignments
· Batch processing of analyses on multiple sequences in one work-step
· Advanced re-alignment and fix-point alignment option
· Manual annotation of sequences
· Dot plot based analyses
· Local complexity region analyses and complexity plots
· Gap fraction graphs
· G/C content analysis and graphs
· Advanced pairwise comparison
· Extract annotations
Database searches:
· Web based sequence search using BLAST
· BLAST on local databases
· Build local BLAST databases
· GenBank Entrez searches
· PubMed lookup
· Web based lookup in UniProt, NCBI, and Google

CLC RNA Workbench 4.0.2 Requirements:

· 256 MB RAM required, 512MB RAM recommended
· 1024x768 screen resolution
· Java 3D

CLC RNA Workbench 4.0.2 Limitations:

· 30 days trial
· Nag screen

Related searches:

8051 workbench

CLC RNA Workbench security information

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